PoisotBaiserDunneEtAl2016

Référence

Poisot, T., Baiser, B., Dunne, J.A., Kefi, S., Massol, F., Mouquet, N., Romanuk, T.N., Stouffer, D.B., Wood, S.A. and Gravel, D. (2016) mangal-making ecological network analysis simple. Ecography, 39(4):384-390. (URL )

Résumé

The study of ecological networks is severely limited by 1) the difficulty to access data, 2) the lack of a standardized way to link meta-data with interactions, and 3) the disparity of formats in which ecological networks themselves are stored and represented. To overcome these limitations, we have designed a data specification for ecological networks. We implemented a database respecting this standard, and released an R package (rmangal) allowing users to programmatically access, curate, and deposit data on ecological interactions. In this article, we show how these tools, in conjunction with other frameworks for the programmatic manipulation of open ecological data, streamlines the analysis process and improves replicability and reproducibility of ecological network studies.

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@ARTICLE { PoisotBaiserDunneEtAl2016,
    AUTHOR = { Poisot, T. and Baiser, B. and Dunne, J.A. and Kefi, S. and Massol, F. and Mouquet, N. and Romanuk, T.N. and Stouffer, D.B. and Wood, S.A. and Gravel, D. },
    TITLE = { mangal-making ecological network analysis simple },
    JOURNAL = { Ecography },
    YEAR = { 2016 },
    VOLUME = { 39 },
    PAGES = { 384-390 },
    NUMBER = { 4 },
    ABSTRACT = { The study of ecological networks is severely limited by 1) the difficulty to access data, 2) the lack of a standardized way to link meta-data with interactions, and 3) the disparity of formats in which ecological networks themselves are stored and represented. To overcome these limitations, we have designed a data specification for ecological networks. We implemented a database respecting this standard, and released an R package (rmangal) allowing users to programmatically access, curate, and deposit data on ecological interactions. In this article, we show how these tools, in conjunction with other frameworks for the programmatic manipulation of open ecological data, streamlines the analysis process and improves replicability and reproducibility of ecological network studies. },
    DOI = { 10.1111/ecog.00976 },
    ISSN = { 1600-0587 },
    PUBLISHER = { Blackwell Publishing Ltd },
    URL = { http://dx.doi.org/10.1111/ecog.00976 },
}

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