JiaoSunZhangEtAl2019

Reference

Jiao, S.-Q., Sun, Y.-Q., Zhang, D.-X., Gao, Q., Jin, Y., Liu, H., Ma, Y., Yang, Y., Porth, I. and Mao, J.-F. (2019) Development of novel EST-SSR markers for Ephedra sinica (Ephedraceae) by transcriptome database mining. Applications in Plant Sciences, 7(1). (Scopus )

Abstract

Premise of the Study: Ephedra sinica (Ephedraceae) is a gymnosperm shrub with a wide distribution across Central and Eastern Asia. It is widely cultivated as a medicinal plant, but its wild populations are monitored to determine whether protection is needed. Methods and Results: Thirty-six microsatellite markers, including 11 polymorphic markers, were developed from E. distachya RNA-Seq data deposited in the National Center for Biotechology Information dbEST database. Among 100 genotyped E. sinica individuals originating from five different population groups, the allele number ranged from three to 22 per locus. Levels of observed and expected heterozygosity ranged from 0 to 0.866 (average 0.176) and 0 to 0.876 (average 0.491), respectively. Allelic polymorphism information content ranged from 0.000 to 0.847 (average 0.333). Cross-species amplifications were successfully conducted with two related Ephedra species for all 11 di- or trinucleotide simple sequence repeats. Conclusions: This study provides the first set of microsatellite markers for genetic monitoring and surveying of this medicinal plant. © 2019 Jiao et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America

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@ARTICLE { JiaoSunZhangEtAl2019,
    AUTHOR = { Jiao, S.-Q. and Sun, Y.-Q. and Zhang, D.-X. and Gao, Q. and Jin, Y. and Liu, H. and Ma, Y. and Yang, Y. and Porth, I. and Mao, J.-F. },
    TITLE = { Development of novel EST-SSR markers for Ephedra sinica (Ephedraceae) by transcriptome database mining },
    JOURNAL = { Applications in Plant Sciences },
    YEAR = { 2019 },
    VOLUME = { 7 },
    NUMBER = { 1 },
    NOTE = { cited By 0 },
    ABSTRACT = { Premise of the Study: Ephedra sinica (Ephedraceae) is a gymnosperm shrub with a wide distribution across Central and Eastern Asia. It is widely cultivated as a medicinal plant, but its wild populations are monitored to determine whether protection is needed. Methods and Results: Thirty-six microsatellite markers, including 11 polymorphic markers, were developed from E. distachya RNA-Seq data deposited in the National Center for Biotechology Information dbEST database. Among 100 genotyped E. sinica individuals originating from five different population groups, the allele number ranged from three to 22 per locus. Levels of observed and expected heterozygosity ranged from 0 to 0.866 (average 0.176) and 0 to 0.876 (average 0.491), respectively. Allelic polymorphism information content ranged from 0.000 to 0.847 (average 0.333). Cross-species amplifications were successfully conducted with two related Ephedra species for all 11 di- or trinucleotide simple sequence repeats. Conclusions: This study provides the first set of microsatellite markers for genetic monitoring and surveying of this medicinal plant. © 2019 Jiao et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America },
    AFFILIATION = { Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China; College of Life Science, Datong University, Datong, Shanxi 037009, China; Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China; State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; Institute for System and Integrated Biology, Pavillon Charles-Eugène-Marchand, 1030 Avenue de la Médecine, Université Laval, Québec, G1V 0A6, Canada; Centre d’Étude de la Forêt, 1030 Avenue de la Médecine, Université Laval, Québec, G1V 0A6, Canada },
    ART_NUMBER = { e01212 },
    AUTHOR_KEYWORDS = { Ephedra sinica; Ephedraceae; expressed sequence tag–simple sequence repeat (EST-SSR) marker; genetic diversity; gymnosperm; medicinal plant },
    DOCUMENT_TYPE = { Article },
    DOI = { 10.1002/aps3.1212 },
    SOURCE = { Scopus },
    URL = { https://www.scopus.com/inward/record.uri?eid=2-s2.0-85060182791&doi=10.1002%2faps3.1212&partnerID=40&md5=43c6e98d9f3dc1cd5648805af717feeb },
}

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