MatasciHungYanEtAl2014

Référence

Matasci, N., Hung, L.-H., Yan, Z., Carpenter, E.J., Wickett, N.J., Mirarab, S., Nam N., Warnow, T., Ayyampalayam, S., Barker, M., Burleigh, J. G., Gitzendanner, M.A., Wafula, E., Der, J.P., dePamphilis, C.W., Roure, B., Philippe, H., Ruhfel, B.R., Miles, N.W., Graham, S.W., Mathews, S., Surek, B., Melkonian, M., Soltis, D.E., Soltis, P.S., Rothfels, C., Pokorny, L., Shaw, J.A., DeGironimo, L., Stevenson, D.W., Villarreal, J.C., Chen, T., Kutchan, T.M., Rolf, M., Baucom, R.S., Deyholos, M.K., Samudrala, R., Tian, Z., Wu, X., Sun, X., Zhang, Y., Wang, J., Leebens-Mack, J., Wong, G.K.-S. (2014) Data access for the 1,000 Plants (1KP) project. Gigascience, 3.

Résumé

The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize our gene and species trees. Users can develop computational pipelines to analyse these data, in conjunction with data of their own that they can upload. Computationally estimated protein-protein interactions and biochemical pathways can be visualized at another site. Finally, we comment on our future plans and how they fit within this scalable system for the dissemination, visualization, and analysis of large multi-species data sets.

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@ARTICLE { MatasciHungYanEtAl2014,
    AUTHOR = { Matasci, N. and Hung, L.-H. and Yan, Z. and Carpenter, E.J. and Wickett, N.J. and Mirarab, S. and Nam N. and Warnow, T. and Ayyampalayam, S. and Barker, M. and Burleigh, J. G. and Gitzendanner, M.A. and Wafula, E. and Der, J.P. and dePamphilis, C.W. and Roure, B. and Philippe, H. and Ruhfel, B.R. and Miles, N.W. and Graham, S.W. and Mathews, S. and Surek, B. and Melkonian, M. and Soltis, D.E. and Soltis, P.S. and Rothfels, C. and Pokorny, L. and Shaw, J.A. and DeGironimo, L. and Stevenson, D.W. and Villarreal, J.C. and Chen, T. and Kutchan, T.M. and Rolf, M. and Baucom, R.S. and Deyholos, M.K. and Samudrala, R. and Tian, Z. and Wu, X. and Sun, X. and Zhang, Y. and Wang, J. and Leebens-Mack, J. and Wong, G.K.-S. },
    TITLE = { Data access for the 1,000 Plants (1KP) project },
    JOURNAL = { Gigascience },
    YEAR = { 2014 },
    VOLUME = { 3 },
    MONTH = { oct },
    ABSTRACT = { The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize our gene and species trees. Users can develop computational pipelines to analyse these data, in conjunction with data of their own that they can upload. Computationally estimated protein-protein interactions and biochemical pathways can be visualized at another site. Finally, we comment on our future plans and how they fit within this scalable system for the dissemination, visualization, and analysis of large multi-species data sets. },
    ARTICLE-NUMBER = { 17 },
    DOI = { 10.1186/2047-217X-3-17 },
    EISSN = { 2047-217X },
    ORCID-NUMBERS = { Wang, Jun/0000-0002-8540-8931 Mathews, Sarah/0000-0002-5518-7541 Graham, Sean/0000-0001-8209-5231 Wong, Gane Ka-Shu/0000-0001-6108-5560 Wang, Jun/0000-0002-2113-5874 Mirarab, Siavash/0000-0001-5410-1518 Gitzendanner, Matthew/0000-0002-7078-4336 Baucom, Regina/0000-0001-7960-498X Barker, Michael/0000-0001-7173-1319 },
    RESEARCHERID-NUMBERS = { Wang, Jun/C-8434-2016 Pokorny, Lisa/H-1233-2013 Mathews, Sarah/A-6513-2015 Graham, Sean/L-3944-2014 Kutchan, Toni/L-4625-2013 dePamphilis, Claude/P-6652-2016 Wong, Gane Ka-Shu/G-5784-2013 },
    UNIQUE-ID = { {ISI:000365655800001} },
}

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